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<FONT color="green">001</FONT>    /*<a name="line.1"></a>
<FONT color="green">002</FONT>     Copyright 2009<a name="line.2"></a>
<FONT color="green">003</FONT>     Ubiquitous Knowledge Processing (UKP) Lab<a name="line.3"></a>
<FONT color="green">004</FONT>     Technische Universitaet Darmstadt<a name="line.4"></a>
<FONT color="green">005</FONT>     All rights reserved.<a name="line.5"></a>
<FONT color="green">006</FONT>    <a name="line.6"></a>
<FONT color="green">007</FONT>     Licensed under the Apache License, Version 2.0 (the "License");<a name="line.7"></a>
<FONT color="green">008</FONT>     you may not use this file except in compliance with the License.<a name="line.8"></a>
<FONT color="green">009</FONT>     You may obtain a copy of the License at<a name="line.9"></a>
<FONT color="green">010</FONT>    <a name="line.10"></a>
<FONT color="green">011</FONT>     http://www.apache.org/licenses/LICENSE-2.0<a name="line.11"></a>
<FONT color="green">012</FONT>    <a name="line.12"></a>
<FONT color="green">013</FONT>     Unless required by applicable law or agreed to in writing, software<a name="line.13"></a>
<FONT color="green">014</FONT>     distributed under the License is distributed on an "AS IS" BASIS,<a name="line.14"></a>
<FONT color="green">015</FONT>     WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.<a name="line.15"></a>
<FONT color="green">016</FONT>     See the License for the specific language governing permissions and<a name="line.16"></a>
<FONT color="green">017</FONT>     limitations under the License.<a name="line.17"></a>
<FONT color="green">018</FONT>     */<a name="line.18"></a>
<FONT color="green">019</FONT>    package org.uimafit.component.xwriter;<a name="line.19"></a>
<FONT color="green">020</FONT>    <a name="line.20"></a>
<FONT color="green">021</FONT>    import java.io.File;<a name="line.21"></a>
<FONT color="green">022</FONT>    import java.io.FileOutputStream;<a name="line.22"></a>
<FONT color="green">023</FONT>    import java.io.IOException;<a name="line.23"></a>
<FONT color="green">024</FONT>    import java.io.InputStream;<a name="line.24"></a>
<FONT color="green">025</FONT>    import java.io.OutputStreamWriter;<a name="line.25"></a>
<FONT color="green">026</FONT>    import java.io.PrintWriter;<a name="line.26"></a>
<FONT color="green">027</FONT>    import java.util.HashSet;<a name="line.27"></a>
<FONT color="green">028</FONT>    import java.util.Iterator;<a name="line.28"></a>
<FONT color="green">029</FONT>    import java.util.Set;<a name="line.29"></a>
<FONT color="green">030</FONT>    import java.util.regex.Matcher;<a name="line.30"></a>
<FONT color="green">031</FONT>    import java.util.regex.Pattern;<a name="line.31"></a>
<FONT color="green">032</FONT>    <a name="line.32"></a>
<FONT color="green">033</FONT>    import org.apache.commons.io.IOUtils;<a name="line.33"></a>
<FONT color="green">034</FONT>    import org.apache.uima.UimaContext;<a name="line.34"></a>
<FONT color="green">035</FONT>    import org.apache.uima.analysis_engine.AnalysisEngineProcessException;<a name="line.35"></a>
<FONT color="green">036</FONT>    import org.apache.uima.cas.CAS;<a name="line.36"></a>
<FONT color="green">037</FONT>    import org.apache.uima.cas.FSIterator;<a name="line.37"></a>
<FONT color="green">038</FONT>    import org.apache.uima.cas.FeatureStructure;<a name="line.38"></a>
<FONT color="green">039</FONT>    import org.apache.uima.cas.Type;<a name="line.39"></a>
<FONT color="green">040</FONT>    import org.apache.uima.cas.text.AnnotationFS;<a name="line.40"></a>
<FONT color="green">041</FONT>    import org.apache.uima.resource.ResourceInitializationException;<a name="line.41"></a>
<FONT color="green">042</FONT>    import org.springframework.util.DigestUtils;<a name="line.42"></a>
<FONT color="green">043</FONT>    import org.uimafit.component.CasConsumer_ImplBase;<a name="line.43"></a>
<FONT color="green">044</FONT>    import org.uimafit.descriptor.ConfigurationParameter;<a name="line.44"></a>
<FONT color="green">045</FONT>    <a name="line.45"></a>
<FONT color="green">046</FONT>    /**<a name="line.46"></a>
<FONT color="green">047</FONT>     * Dumps CAS content to a text file. This is useful when setting up test cases which contain a<a name="line.47"></a>
<FONT color="green">048</FONT>     * reference output to which an actually produced CAS is compared. The format produced by this<a name="line.48"></a>
<FONT color="green">049</FONT>     * component is more easily comparable than a XML or XMI format produced by {@link XWriter}.<a name="line.49"></a>
<FONT color="green">050</FONT>     *<a name="line.50"></a>
<FONT color="green">051</FONT>     * @author Richard Eckart de Castilho<a name="line.51"></a>
<FONT color="green">052</FONT>     */<a name="line.52"></a>
<FONT color="green">053</FONT>    public class CASDumpWriter extends CasConsumer_ImplBase {<a name="line.53"></a>
<FONT color="green">054</FONT>            /**<a name="line.54"></a>
<FONT color="green">055</FONT>             * Pattern inclusion prefix.<a name="line.55"></a>
<FONT color="green">056</FONT>             */<a name="line.56"></a>
<FONT color="green">057</FONT>            public static final String INCLUDE_PREFIX = "+|";<a name="line.57"></a>
<FONT color="green">058</FONT>            /**<a name="line.58"></a>
<FONT color="green">059</FONT>             * Pattern exclusion prefix.<a name="line.59"></a>
<FONT color="green">060</FONT>             */<a name="line.60"></a>
<FONT color="green">061</FONT>            public static final String EXCLUDE_PREFIX = "-|";<a name="line.61"></a>
<FONT color="green">062</FONT>    <a name="line.62"></a>
<FONT color="green">063</FONT>            /**<a name="line.63"></a>
<FONT color="green">064</FONT>             * Output file. If multiple CASes as processed, their contents are concatenated into this file.<a name="line.64"></a>
<FONT color="green">065</FONT>             * Mind that a test case using this consumer with multiple CASes requires a reader which<a name="line.65"></a>
<FONT color="green">066</FONT>             * produced the CASes always in the same order. When this file is set to "-", the dump does to<a name="line.66"></a>
<FONT color="green">067</FONT>             * {@link System#out} (default).<a name="line.67"></a>
<FONT color="green">068</FONT>             */<a name="line.68"></a>
<FONT color="green">069</FONT>            public static final String PARAM_OUTPUT_FILE = "OutputFile";<a name="line.69"></a>
<FONT color="green">070</FONT>            @ConfigurationParameter(name = PARAM_OUTPUT_FILE, mandatory = true, defaultValue="-")<a name="line.70"></a>
<FONT color="green">071</FONT>            private File outFile;<a name="line.71"></a>
<FONT color="green">072</FONT>    <a name="line.72"></a>
<FONT color="green">073</FONT>            /**<a name="line.73"></a>
<FONT color="green">074</FONT>             * Whether to dump the content of the {@link CAS#getDocumentAnnotation()}.<a name="line.74"></a>
<FONT color="green">075</FONT>             */<a name="line.75"></a>
<FONT color="green">076</FONT>            public static final String PARAM_WRITE_DOCUMENT_META_DATA = "WriteDocumentMetaData";<a name="line.76"></a>
<FONT color="green">077</FONT>            @ConfigurationParameter(name = PARAM_WRITE_DOCUMENT_META_DATA, mandatory = true, defaultValue = "true")<a name="line.77"></a>
<FONT color="green">078</FONT>            private boolean writeDocumentMetaData;<a name="line.78"></a>
<FONT color="green">079</FONT>    <a name="line.79"></a>
<FONT color="green">080</FONT>            /**<a name="line.80"></a>
<FONT color="green">081</FONT>             * Include/exclude features according to the following patterns. Mind that the patterns do not<a name="line.81"></a>
<FONT color="green">082</FONT>             * actually match feature names but lines produced by {@link FeatureStructure#toString()}.<a name="line.82"></a>
<FONT color="green">083</FONT>             */<a name="line.83"></a>
<FONT color="green">084</FONT>            public static final String PARAM_FEATURE_PATTERNS = "FeaturePatterns";<a name="line.84"></a>
<FONT color="green">085</FONT>            @ConfigurationParameter(name = PARAM_FEATURE_PATTERNS, mandatory = true, defaultValue = {<a name="line.85"></a>
<FONT color="green">086</FONT>                            "+|.*", "-|^.*documentUri:.*$", "-|^.*collectionId:.*$", "-|^.*documentBaseUri:.*$" })<a name="line.86"></a>
<FONT color="green">087</FONT>            private String[] rawFeaturePatterns;<a name="line.87"></a>
<FONT color="green">088</FONT>            private InExPattern[] featurePatterns;<a name="line.88"></a>
<FONT color="green">089</FONT>    <a name="line.89"></a>
<FONT color="green">090</FONT>            /**<a name="line.90"></a>
<FONT color="green">091</FONT>             * Include/exclude specified UIMA types in the output.<a name="line.91"></a>
<FONT color="green">092</FONT>             */<a name="line.92"></a>
<FONT color="green">093</FONT>            public static final String PARAM_TYPE_PATTERNS = "TypePatterns";<a name="line.93"></a>
<FONT color="green">094</FONT>            @ConfigurationParameter(name = PARAM_TYPE_PATTERNS, mandatory = true, defaultValue = { "+|.*" })<a name="line.94"></a>
<FONT color="green">095</FONT>            private String[] rawTypePatterns;<a name="line.95"></a>
<FONT color="green">096</FONT>            private InExPattern[] typePatterns;<a name="line.96"></a>
<FONT color="green">097</FONT>    <a name="line.97"></a>
<FONT color="green">098</FONT>            private PrintWriter out;<a name="line.98"></a>
<FONT color="green">099</FONT>            private int iCas;<a name="line.99"></a>
<FONT color="green">100</FONT>    <a name="line.100"></a>
<FONT color="green">101</FONT>            @Override<a name="line.101"></a>
<FONT color="green">102</FONT>            public void initialize(UimaContext context) throws ResourceInitializationException {<a name="line.102"></a>
<FONT color="green">103</FONT>                    super.initialize(context);<a name="line.103"></a>
<FONT color="green">104</FONT>    <a name="line.104"></a>
<FONT color="green">105</FONT>                    try {<a name="line.105"></a>
<FONT color="green">106</FONT>                            if (out == null) {<a name="line.106"></a>
<FONT color="green">107</FONT>                                    if ("-".equals(outFile.getName())) {<a name="line.107"></a>
<FONT color="green">108</FONT>                                            out = new PrintWriter(System.out);<a name="line.108"></a>
<FONT color="green">109</FONT>                                    }<a name="line.109"></a>
<FONT color="green">110</FONT>                                    else {<a name="line.110"></a>
<FONT color="green">111</FONT>                                            if (outFile.getParentFile() != null) {<a name="line.111"></a>
<FONT color="green">112</FONT>                                            outFile.getParentFile().mkdirs();<a name="line.112"></a>
<FONT color="green">113</FONT>                                            }<a name="line.113"></a>
<FONT color="green">114</FONT>                                            out = new PrintWriter(<a name="line.114"></a>
<FONT color="green">115</FONT>                                                            new OutputStreamWriter(new FileOutputStream(outFile), "UTF-8"));<a name="line.115"></a>
<FONT color="green">116</FONT>                                    }<a name="line.116"></a>
<FONT color="green">117</FONT>                            }<a name="line.117"></a>
<FONT color="green">118</FONT>                    }<a name="line.118"></a>
<FONT color="green">119</FONT>                    catch (IOException e) {<a name="line.119"></a>
<FONT color="green">120</FONT>                            throw new ResourceInitializationException(e);<a name="line.120"></a>
<FONT color="green">121</FONT>                    }<a name="line.121"></a>
<FONT color="green">122</FONT>    <a name="line.122"></a>
<FONT color="green">123</FONT>                    typePatterns = compilePatterns(rawTypePatterns);<a name="line.123"></a>
<FONT color="green">124</FONT>                    featurePatterns = compilePatterns(rawFeaturePatterns);<a name="line.124"></a>
<FONT color="green">125</FONT>            }<a name="line.125"></a>
<FONT color="green">126</FONT>    <a name="line.126"></a>
<FONT color="green">127</FONT>            @Override<a name="line.127"></a>
<FONT color="green">128</FONT>            public void process(CAS aCAS) throws AnalysisEngineProcessException {<a name="line.128"></a>
<FONT color="green">129</FONT>                    out.println("======== CAS " + iCas + " begin ==================================");<a name="line.129"></a>
<FONT color="green">130</FONT>                    out.println();<a name="line.130"></a>
<FONT color="green">131</FONT>    <a name="line.131"></a>
<FONT color="green">132</FONT>                    Iterator&lt;CAS&gt; viewIt = aCAS.getViewIterator();<a name="line.132"></a>
<FONT color="green">133</FONT>                    while (viewIt.hasNext()) {<a name="line.133"></a>
<FONT color="green">134</FONT>                            CAS view = viewIt.next();<a name="line.134"></a>
<FONT color="green">135</FONT>                            processView(view);<a name="line.135"></a>
<FONT color="green">136</FONT>    <a name="line.136"></a>
<FONT color="green">137</FONT>                            if (view.getDocumentText() == null &amp;&amp; view.getSofaDataStream() != null) {<a name="line.137"></a>
<FONT color="green">138</FONT>                                    processSofaData(view);<a name="line.138"></a>
<FONT color="green">139</FONT>                            }<a name="line.139"></a>
<FONT color="green">140</FONT>                    }<a name="line.140"></a>
<FONT color="green">141</FONT>    <a name="line.141"></a>
<FONT color="green">142</FONT>                    out.println("======== CAS " + iCas + " end ==================================");<a name="line.142"></a>
<FONT color="green">143</FONT>                    out.println();<a name="line.143"></a>
<FONT color="green">144</FONT>                    out.println();<a name="line.144"></a>
<FONT color="green">145</FONT>                    out.flush();<a name="line.145"></a>
<FONT color="green">146</FONT>    <a name="line.146"></a>
<FONT color="green">147</FONT>                    iCas++;<a name="line.147"></a>
<FONT color="green">148</FONT>            }<a name="line.148"></a>
<FONT color="green">149</FONT>    <a name="line.149"></a>
<FONT color="green">150</FONT>            @Override<a name="line.150"></a>
<FONT color="green">151</FONT>            public void collectionProcessComplete() {<a name="line.151"></a>
<FONT color="green">152</FONT>                    IOUtils.closeQuietly(out);<a name="line.152"></a>
<FONT color="green">153</FONT>                    out = null;<a name="line.153"></a>
<FONT color="green">154</FONT>            }<a name="line.154"></a>
<FONT color="green">155</FONT>    <a name="line.155"></a>
<FONT color="green">156</FONT>            private void processDocumentMetadata(CAS aCAS) {<a name="line.156"></a>
<FONT color="green">157</FONT>                    if (!writeDocumentMetaData) {<a name="line.157"></a>
<FONT color="green">158</FONT>                            return;<a name="line.158"></a>
<FONT color="green">159</FONT>                    }<a name="line.159"></a>
<FONT color="green">160</FONT>    <a name="line.160"></a>
<FONT color="green">161</FONT>                    processFeatureStructure(aCAS.getDocumentAnnotation());<a name="line.161"></a>
<FONT color="green">162</FONT>            }<a name="line.162"></a>
<FONT color="green">163</FONT>    <a name="line.163"></a>
<FONT color="green">164</FONT>            private void processDocumentText(CAS aCAS) {<a name="line.164"></a>
<FONT color="green">165</FONT>                    out.println();<a name="line.165"></a>
<FONT color="green">166</FONT>                    out.println("CAS-Text:");<a name="line.166"></a>
<FONT color="green">167</FONT>                    out.println(aCAS.getDocumentText());<a name="line.167"></a>
<FONT color="green">168</FONT>            }<a name="line.168"></a>
<FONT color="green">169</FONT>    <a name="line.169"></a>
<FONT color="green">170</FONT>            private void processFeatureStructures(CAS aCAS) {<a name="line.170"></a>
<FONT color="green">171</FONT>                    Set&lt;String&gt; typesToPrint = getTypes(aCAS);<a name="line.171"></a>
<FONT color="green">172</FONT>                    FSIterator&lt;AnnotationFS&gt; annotationIterator = aCAS.getAnnotationIndex().iterator();<a name="line.172"></a>
<FONT color="green">173</FONT>                    while (annotationIterator.hasNext()) {<a name="line.173"></a>
<FONT color="green">174</FONT>                            AnnotationFS annotation = annotationIterator.next();<a name="line.174"></a>
<FONT color="green">175</FONT>                            if (!typesToPrint.contains(annotation.getType().getName())) {<a name="line.175"></a>
<FONT color="green">176</FONT>                                    continue;<a name="line.176"></a>
<FONT color="green">177</FONT>                            }<a name="line.177"></a>
<FONT color="green">178</FONT>                            try {<a name="line.178"></a>
<FONT color="green">179</FONT>                                    out.println("[" + annotation.getCoveredText() + "]");<a name="line.179"></a>
<FONT color="green">180</FONT>                            }<a name="line.180"></a>
<FONT color="green">181</FONT>                            catch (IndexOutOfBoundsException e) {<a name="line.181"></a>
<FONT color="green">182</FONT>                                    out.println("&lt;OFFSETS OUT OF BOUNDS&gt;");<a name="line.182"></a>
<FONT color="green">183</FONT>                            }<a name="line.183"></a>
<FONT color="green">184</FONT>                            processFeatureStructure(annotation);<a name="line.184"></a>
<FONT color="green">185</FONT>                    }<a name="line.185"></a>
<FONT color="green">186</FONT>            }<a name="line.186"></a>
<FONT color="green">187</FONT>    <a name="line.187"></a>
<FONT color="green">188</FONT>            private void processFeatureStructure(FeatureStructure aFS) {<a name="line.188"></a>
<FONT color="green">189</FONT>                    String meta = aFS.toString();<a name="line.189"></a>
<FONT color="green">190</FONT>                    for (String line : meta.split("\n")) {<a name="line.190"></a>
<FONT color="green">191</FONT>                            boolean print = false;<a name="line.191"></a>
<FONT color="green">192</FONT>                            for (InExPattern p : featurePatterns) {<a name="line.192"></a>
<FONT color="green">193</FONT>                                    p.matchter.reset(line);<a name="line.193"></a>
<FONT color="green">194</FONT>                                    if (p.matchter.matches()) {<a name="line.194"></a>
<FONT color="green">195</FONT>                                            print = p.includeInOutput;<a name="line.195"></a>
<FONT color="green">196</FONT>                                    }<a name="line.196"></a>
<FONT color="green">197</FONT>                            }<a name="line.197"></a>
<FONT color="green">198</FONT>                            if (print) {<a name="line.198"></a>
<FONT color="green">199</FONT>                                    out.println(line);<a name="line.199"></a>
<FONT color="green">200</FONT>                            }<a name="line.200"></a>
<FONT color="green">201</FONT>                    }<a name="line.201"></a>
<FONT color="green">202</FONT>            }<a name="line.202"></a>
<FONT color="green">203</FONT>    <a name="line.203"></a>
<FONT color="green">204</FONT>            private void processView(CAS aCAS) {<a name="line.204"></a>
<FONT color="green">205</FONT>                    out.println("-------- View " + aCAS.getViewName()<a name="line.205"></a>
<FONT color="green">206</FONT>                                    + " begin ----------------------------------");<a name="line.206"></a>
<FONT color="green">207</FONT>                    out.println();<a name="line.207"></a>
<FONT color="green">208</FONT>    <a name="line.208"></a>
<FONT color="green">209</FONT>                    processDocumentMetadata(aCAS);<a name="line.209"></a>
<FONT color="green">210</FONT>                    processDocumentText(aCAS);<a name="line.210"></a>
<FONT color="green">211</FONT>                    processFeatureStructures(aCAS);<a name="line.211"></a>
<FONT color="green">212</FONT>    <a name="line.212"></a>
<FONT color="green">213</FONT>                    out.println("-------- View " + aCAS.getViewName()<a name="line.213"></a>
<FONT color="green">214</FONT>                                    + " end ----------------------------------");<a name="line.214"></a>
<FONT color="green">215</FONT>                    out.println();<a name="line.215"></a>
<FONT color="green">216</FONT>            }<a name="line.216"></a>
<FONT color="green">217</FONT>    <a name="line.217"></a>
<FONT color="green">218</FONT>            private void processSofaData(CAS aCAS) throws AnalysisEngineProcessException {<a name="line.218"></a>
<FONT color="green">219</FONT>                    out.println("Sofa data:");<a name="line.219"></a>
<FONT color="green">220</FONT>    <a name="line.220"></a>
<FONT color="green">221</FONT>                    //<a name="line.221"></a>
<FONT color="green">222</FONT>    <a name="line.222"></a>
<FONT color="green">223</FONT>                    // Mime type<a name="line.223"></a>
<FONT color="green">224</FONT>                    String mimeType = aCAS.getSofaMimeType();<a name="line.224"></a>
<FONT color="green">225</FONT>                    if (mimeType != null) {<a name="line.225"></a>
<FONT color="green">226</FONT>                            out.println("   mime type:\t" + mimeType);<a name="line.226"></a>
<FONT color="green">227</FONT>                    }<a name="line.227"></a>
<FONT color="green">228</FONT>                    // Data<a name="line.228"></a>
<FONT color="green">229</FONT>                    byte[] bytes = null;<a name="line.229"></a>
<FONT color="green">230</FONT>                    InputStream in = null;<a name="line.230"></a>
<FONT color="green">231</FONT>                    try {<a name="line.231"></a>
<FONT color="green">232</FONT>                            in = aCAS.getSofaDataStream();<a name="line.232"></a>
<FONT color="green">233</FONT>                            bytes = IOUtils.toByteArray(in);<a name="line.233"></a>
<FONT color="green">234</FONT>                    } catch (IOException e) {<a name="line.234"></a>
<FONT color="green">235</FONT>                            throw new AnalysisEngineProcessException(e);<a name="line.235"></a>
<FONT color="green">236</FONT>                    }<a name="line.236"></a>
<FONT color="green">237</FONT>                    finally {<a name="line.237"></a>
<FONT color="green">238</FONT>                            IOUtils.closeQuietly(in);<a name="line.238"></a>
<FONT color="green">239</FONT>                    }<a name="line.239"></a>
<FONT color="green">240</FONT>                    if (bytes != null) {<a name="line.240"></a>
<FONT color="green">241</FONT>                            // Data size<a name="line.241"></a>
<FONT color="green">242</FONT>                            out.println("   size:\t" + bytes.length + " byte(s)");<a name="line.242"></a>
<FONT color="green">243</FONT>                            // Hash value of the bytes<a name="line.243"></a>
<FONT color="green">244</FONT>                            String hash = DigestUtils.md5DigestAsHex(bytes);<a name="line.244"></a>
<FONT color="green">245</FONT>                            out.println("   hash value:\t" + hash);<a name="line.245"></a>
<FONT color="green">246</FONT>                    }<a name="line.246"></a>
<FONT color="green">247</FONT>    <a name="line.247"></a>
<FONT color="green">248</FONT>                    out.println();<a name="line.248"></a>
<FONT color="green">249</FONT>            }<a name="line.249"></a>
<FONT color="green">250</FONT>    <a name="line.250"></a>
<FONT color="green">251</FONT>            private static InExPattern[] compilePatterns(String[] aPatterns) {<a name="line.251"></a>
<FONT color="green">252</FONT>                    InExPattern[] patterns = new InExPattern[aPatterns.length];<a name="line.252"></a>
<FONT color="green">253</FONT>                    for (int i = 0; i &lt; aPatterns.length; i++) {<a name="line.253"></a>
<FONT color="green">254</FONT>                            if (aPatterns[i].startsWith(INCLUDE_PREFIX)) {<a name="line.254"></a>
<FONT color="green">255</FONT>                                    patterns[i] = new InExPattern(aPatterns[i].substring(INCLUDE_PREFIX.length()), true);<a name="line.255"></a>
<FONT color="green">256</FONT>                            }<a name="line.256"></a>
<FONT color="green">257</FONT>                            else if (aPatterns[i].startsWith(EXCLUDE_PREFIX)) {<a name="line.257"></a>
<FONT color="green">258</FONT>                                    patterns[i] = new InExPattern(aPatterns[i].substring(EXCLUDE_PREFIX.length()),<a name="line.258"></a>
<FONT color="green">259</FONT>                                                    false);<a name="line.259"></a>
<FONT color="green">260</FONT>                            }<a name="line.260"></a>
<FONT color="green">261</FONT>                            else {<a name="line.261"></a>
<FONT color="green">262</FONT>                                    patterns[i] = new InExPattern(aPatterns[i], false);<a name="line.262"></a>
<FONT color="green">263</FONT>                            }<a name="line.263"></a>
<FONT color="green">264</FONT>                    }<a name="line.264"></a>
<FONT color="green">265</FONT>                    return patterns;<a name="line.265"></a>
<FONT color="green">266</FONT>            }<a name="line.266"></a>
<FONT color="green">267</FONT>    <a name="line.267"></a>
<FONT color="green">268</FONT>            private Set&lt;String&gt; getTypes(CAS cas) {<a name="line.268"></a>
<FONT color="green">269</FONT>                    Set&lt;String&gt; types = new HashSet&lt;String&gt;();<a name="line.269"></a>
<FONT color="green">270</FONT>                    Iterator&lt;Type&gt; typeIt = cas.getTypeSystem().getTypeIterator();<a name="line.270"></a>
<FONT color="green">271</FONT>                    nextType: while (typeIt.hasNext()) {<a name="line.271"></a>
<FONT color="green">272</FONT>                            Type type = typeIt.next();<a name="line.272"></a>
<FONT color="green">273</FONT>    <a name="line.273"></a>
<FONT color="green">274</FONT>                            if (type.getName().equals(cas.getDocumentAnnotation().getType().getName())) {<a name="line.274"></a>
<FONT color="green">275</FONT>                                    continue;<a name="line.275"></a>
<FONT color="green">276</FONT>                            }<a name="line.276"></a>
<FONT color="green">277</FONT>    <a name="line.277"></a>
<FONT color="green">278</FONT>                            for (InExPattern p : typePatterns) {<a name="line.278"></a>
<FONT color="green">279</FONT>                                    p.matchter.reset(type.getName());<a name="line.279"></a>
<FONT color="green">280</FONT>                                    if (p.matchter.matches()) {<a name="line.280"></a>
<FONT color="green">281</FONT>                                            if (p.includeInOutput) {<a name="line.281"></a>
<FONT color="green">282</FONT>                                                    types.add(type.getName());<a name="line.282"></a>
<FONT color="green">283</FONT>                                            }<a name="line.283"></a>
<FONT color="green">284</FONT>                                            else {<a name="line.284"></a>
<FONT color="green">285</FONT>                                                    types.remove(type.getName());<a name="line.285"></a>
<FONT color="green">286</FONT>                                            }<a name="line.286"></a>
<FONT color="green">287</FONT>                                            continue nextType;<a name="line.287"></a>
<FONT color="green">288</FONT>                                    }<a name="line.288"></a>
<FONT color="green">289</FONT>                            }<a name="line.289"></a>
<FONT color="green">290</FONT>                    }<a name="line.290"></a>
<FONT color="green">291</FONT>                    return types;<a name="line.291"></a>
<FONT color="green">292</FONT>            }<a name="line.292"></a>
<FONT color="green">293</FONT>    <a name="line.293"></a>
<FONT color="green">294</FONT>            private static class InExPattern {<a name="line.294"></a>
<FONT color="green">295</FONT>                    final boolean includeInOutput;<a name="line.295"></a>
<FONT color="green">296</FONT>                    final Matcher matchter;<a name="line.296"></a>
<FONT color="green">297</FONT>    <a name="line.297"></a>
<FONT color="green">298</FONT>                    public InExPattern(String aPattern, boolean aInclude) {<a name="line.298"></a>
<FONT color="green">299</FONT>                            includeInOutput = aInclude;<a name="line.299"></a>
<FONT color="green">300</FONT>                            matchter = Pattern.compile(aPattern).matcher("");<a name="line.300"></a>
<FONT color="green">301</FONT>                    }<a name="line.301"></a>
<FONT color="green">302</FONT>            }<a name="line.302"></a>
<FONT color="green">303</FONT>    }<a name="line.303"></a>




























































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